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Creators/Authors contains: "Faramarzi, Vahid"

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  1. Abstract This review paper comprehensively analyzes recent advancements in optical fiber‐based biosensors, focusing on conventional fiber and photonic crystal structures. This paper overviews the significant applications of optical fiber biosensors, including bioimaging, quality analysis, food safety, and field environment monitoring, setting the stage for subsequent discussions. The primary objective of the review is to systematically evaluate recent literature concerning optical fiber‐based biosensors, emphasizing their sensitivities and resolutions. The second section explores integrating plasmonic materials such as graphene, TDMC, germanium, black phosphorus, and silicon within optical fiber biosensors, elucidating their roles in enhancing sensitivity and resolution in biosensing applications. A detailed examination of photonic crystal fibers (PCF) follows, categorizing them into internally and externally metal film‐coated biosensors, highlighting their distinct advantages and limitations. Comparative analyses in two tables delineate the performance and sensitivity of optical fiber‐based biosensors, mainly focusing on different coating strategies. The final section of the review discusses emerging trends and applications in optical fiber biosensing technologies, underscoring their potential to transform biomedical and environmental monitoring fields. By synthesizing recent developments and challenges, this review aims to offer researchers and practitioners a comprehensive understanding of optical fiber‐based biosensors, facilitating informed decision‐making and driving further advancements in the field. 
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  2. Abstract Field-effect transistor (FET)-based biosensors allow label-free detection of biomolecules by measuring their intrinsic charges. The detection limit of these sensors is determined by the Debye screening of the charges from counter ions in solutions. Here, we use FETs with a deformed monolayer graphene channel for the detection of nucleic acids. These devices with even millimeter scale channels show an ultra-high sensitivity detection in buffer and human serum sample down to 600 zM and 20 aM, respectively, which are ∼18 and ∼600 nucleic acid molecules. Computational simulations reveal that the nanoscale deformations can form ‘electrical hot spots’ in the sensing channel which reduce the charge screening at the concave regions. Moreover, the deformed graphene could exhibit a band-gap, allowing an exponential change in the source-drain current from small numbers of charges. Collectively, these phenomena allow for ultrasensitive electronic biomolecular detection in millimeter scale structures. 
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  3. Abstract Enzymatic DNA amplification‐based approaches involving intercalating DNA‐binding fluorescent dyes and expensive optical detectors are the gold standard for nucleic acid detection. As components of a simplified and miniaturized system, conventional silicon‐based ion sensitive field effect transistors (ISFETs) that measure a decrease in pH due to the generation of pyrophosphates during DNA amplification have been previously reported. In this article, Bst polymerase in a loop‐mediated isothermal amplification (LAMP) reaction combined with target‐specific primers and crumpled graphene field effect transistors (gFETs) to electrically detect amplification by sensing the reduction in primers is used. Graphene is known to adsorb single‐stranded DNA due to noncovalent π–π bonds, but not double‐stranded DNA. This approach does not require any surface functionalization and allows the detection of primer concentrations at the endpoint of reactions. As recently demonstrated, the crumpled gFET over the conventional flat gFET sensors due to their superior sensitivity is chosen. The endpoint of amplification reaction with starting concentrations down to 8 × 10−21min 90 min including the time of amplification and detection is detected. With its high sensitivity and small footprint, this platform will help bring complex lab‐based diagnostic and genotyping amplification assays to the point‐of‐care. 
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  4. Abstract Universal platforms for biomolecular analysis using label‐free sensing modalities can address important diagnostic challenges. Electrical field effect‐sensors are an important class of devices that can enable point‐of‐care sensing by probing the charge in the biological entities. Use of crumpled graphene for this application is especially promising. It is previously reported that the limit of detection (LoD) on electrical field effect‐based sensors using DNA molecules on the crumpled graphene FET (field‐effect transistor) platform. Here, the crumpled graphene FET‐based biosensing of important biomarkers including small molecules and proteins is reported. The performance of devices is systematically evaluated and optimized by studying the effect of the crumpling ratio on electrical double layer (EDL) formation and bandgap opening on the graphene. It is also shown that a small and electroneutral molecule dopamine can be captured by an aptamer and its conformation change induced electrical signal changes. Three kinds of proteins were captured with specific antibodies including interleukin‐6 (IL‐6) and two viral proteins. All tested biomarkers are detectable with the highest sensitivity reported on the electrical platform. Significantly, two COVID‐19 related proteins, nucleocapsid (N‐) and spike (S‐) proteins antigens are successfully detected with extremely low LoDs. This electrical antigen tests can contribute to the challenge of rapid, point‐of‐care diagnostics. 
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